STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI55823.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
SDI71600.1
Tetratricopeptide repeat-containing protein.
  
     0.554
SDI76540.1
Hypothetical protein.
  
     0.539
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
   
   0.523
SDI95006.1
Hypothetical protein; Belongs to the MtfA family.
  
     0.515
SDJ52225.1
O-Antigen ligase.
  
     0.510
rpsP
SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.
       0.507
SDK07125.1
CarboxypepD_reg-like domain-containing protein.
  
 
   0.485
SDI55761.1
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain).
       0.481
SDJ56965.1
Hypothetical protein.
  
     0.480
SDK02001.1
Hypothetical protein.
  
     0.456
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.