STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI56957.1BNR repeat-containing family member. (449 aa)    
Predicted Functional Partners:
SDI56879.1
Glycosyl hydrolases family 43.
 
     0.765
lacZ
Beta-galactosidase.
       0.714
SDI53414.1
Protein of unknown function, DUF608.
  
     0.700
SDI53773.1
Lysophospholipase L1.
  
    0.697
SDJ33501.1
Oligogalacturonide lyase.
  
     0.695
SDI61044.1
Rhamnogalacturonyl hydrolase YesR.
    0.652
SDI54186.1
Rhamnogalacturonyl hydrolase YesR.
    0.641
SDJ33595.1
Glycosyl hydrolases family 43.
  
     0.616
SDI89694.1
Glycosyl hydrolases family 32 N-terminal domain-containing protein.
  
     0.615
SDI86705.1
Hypothetical protein.
  
     0.609
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.