STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI57339.1Rhamnogalacturonan endolyase. (869 aa)    
Predicted Functional Partners:
SDI53863.1
Lysophospholipase L1.
  0.809
SDJ42139.1
Lysophospholipase L1.
  0.809
SDI57298.1
SusE outer membrane protein.
       0.773
rhgT
Lysophospholipase L1.
 
  0.769
SDI53773.1
Lysophospholipase L1.
 
  0.751
SDI97754.1
Pectinesterase.
 
  0.710
SDI57263.1
alpha-L-fucosidase 2.
 
 
   0.685
SDI54150.1
Parallel beta-helix repeat (two copies).
  
 
  0.625
SDI57384.1
Pectinesterase.
 
  
  0.620
SDI57231.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
  
 
  0.597
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.