STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI57608.1Pectate lyase superfamily protein; Belongs to the glycosyl hydrolase 28 family. (521 aa)    
Predicted Functional Partners:
SDI57642.1
Pectinesterase.
 
  
  0.869
SDI97754.1
Pectinesterase.
 
   0.781
SDI57193.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.764
SDI97661.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.761
SDI97633.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.759
xynB
Acetyl esterase/lipase.
       0.741
SDI98608.1
Pectinesterase.
 
  
  0.682
rhgT
Lysophospholipase L1.
 
   0.663
SDI57384.1
Pectinesterase.
  
  
  0.623
SDI53863.1
Lysophospholipase L1.
 
 
   0.602
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.