STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI61044.1Rhamnogalacturonyl hydrolase YesR. (384 aa)    
Predicted Functional Partners:
SDI61079.1
Hypothetical protein.
     0.868
SDI60269.1
Hypothetical protein.
 
     0.687
SDI54259.1
alpha-L-rhamnosidase.
 
     0.680
SDI60690.1
Protein of unknown function.
  
  
  0.666
SDJ27415.1
Protein of unknown function.
 
     0.665
SDI60956.1
Protein of unknown function.
  
  
  0.659
SDI53773.1
Lysophospholipase L1.
 
    0.658
SDI56957.1
BNR repeat-containing family member.
    0.652
SDI61110.1
Signal transduction histidine kinase.
 
     0.651
SDI52729.1
Starch-binding associating with outer membrane.
  
    0.645
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.