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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI61784.1PAP2 superfamily protein. (518 aa)    
Predicted Functional Partners:
SDI61753.1
Putative MetA-pathway of phenol degradation.
 
     0.952
SDI87806.1
FG-GAP repeat-containing protein.
  
     0.738
SDI87845.1
Repeat domain-containing protein.
  
     0.714
SDI87765.1
Starch-binding associating with outer membrane.
  
 
   0.698
menE
O-succinylbenzoic acid--CoA ligase.
    
  0.653
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.556
SDI96718.1
Starch-binding associating with outer membrane.
  
 
   0.521
SDI95147.1
Colicin import membrane protein.
  
     0.498
SDI73264.1
Starch-binding associating with outer membrane.
  
 
   0.465
SDI89974.1
Outer membrane protein TolC.
  
     0.460
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.