STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI63871.1Outer membrane receptor for ferrienterochelin and colicins. (750 aa)    
Predicted Functional Partners:
SDI63907.1
Protein of unknown function, DUF255.
 
     0.827
crtY
Lycopene beta-cyclase.
       0.774
mntH
Manganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
     
 0.543
sirR
Iron (metal) dependent repressor, DtxR family.
       0.509
yqiW
Putative bacilliredoxin, YphP/YqiW family; Belongs to the UPF0403 family.
       0.508
SDI83744.1
Hypothetical protein.
  
   0.447
SDI63021.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
  
   0.441
tonB
Outer membrane transport energization protein TonB.
   
 
 0.434
SDJ71152.1
Protein TonB.
   
 
 0.434
SDJ85342.1
SprB repeat-containing protein; Partial gene; manually curated.
  
 
   0.420
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.