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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI64620.1BNR repeat-like domain-containing protein. (621 aa)    
Predicted Functional Partners:
SDI64655.1
Glycosyl hydrolases family 32 N-terminal domain-containing protein.
    0.975
SDI64428.1
Trehalase.
     0.946
SDI64540.1
Dienelactone hydrolase.
 
     0.881
SDI64722.1
Putative collagen-binding domain of a collagenase.
 
    0.864
SDI64760.1
Putative collagen-binding domain of a collagenase.
 
     0.862
SDI65122.1
Hypothetical protein.
 
 
  0.849
SDI64836.1
Hypothetical protein.
 
    0.835
SDI64920.1
Hypothetical protein.
 
    0.820
SDI73352.1
Trehalase.
 
     0.812
SDI64256.1
Glycosyl hydrolase family 20, domain 2.
 
    0.811
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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