Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDI65040.1Hypothetical protein. (672 aa)    
Predicted Functional Partners:
SDI65122.1
Hypothetical protein.
 
     0.762
SDI64385.1
alpha-L-rhamnosidase.
 
    0.746
SDI64580.1
Alpha-L-rhamnosidase N-terminal domain-containing protein.
 
     0.713
SDI65292.1
Protein of unknown function.
 
     0.712
SDI65363.1
alpha-L-rhamnosidase.
 
     0.692
SDI64722.1
Putative collagen-binding domain of a collagenase.
 
     0.672
SDJ74422.1
alpha-L-rhamnosidase.
  
     0.630
SDI65078.1
Hypothetical protein.
 
     0.614
SDI64540.1
Dienelactone hydrolase.
 
     0.610
SDI65204.1
alpha-L-rhamnosidase.
 
     0.609
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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