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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI68220.1Cytochrome c. (132 aa)    
Predicted Functional Partners:
ccoN
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.772
norB
Nitric oxide reductase, NorB subunit apoprotein; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.715
SDJ07669.1
Hypothetical protein.
  
     0.620
hemB
Porphobilinogen synthase; Belongs to the ALAD family.
       0.596
SDI73697.1
Hypothetical protein.
  
  
 0.552
ctaC
Cytochrome c oxidase subunit 2.
 
  
 0.550
SDJ28574.1
IPT/TIG domain-containing protein.
    
 0.529
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
    
 0.521
ctaD
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
    
 0.485
SDI68147.1
Four helix bundle protein.
       0.464
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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