STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoA3-oxoacid CoA-transferase subunit B. (219 aa)    
Predicted Functional Partners:
atoD
3-oxoacid CoA-transferase subunit A.
 0.999
SDJ31478.1
3-oxoacid CoA-transferase.
 
0.965
SDK02207.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.953
mvaB
hydroxymethylglutaryl-CoA lyase.
  
 
 0.913
SDJ26267.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.913
SDK02167.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.913
SDJ40564.1
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.912
mvaS
hydroxymethylglutaryl-CoA synthase.
     
 0.902
SDI68509.1
Hypothetical protein.
       0.773
SDI68541.1
Hypothetical protein.
       0.773
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.