STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI68720.1Protein involved in gliding motility GldH. (159 aa)    
Predicted Functional Partners:
mrcA
Penicillin-binding protein 1A.
       0.830
fjo17
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development).
       0.830
gldD
Protein involved in gliding motility GldD.
  
   
 0.772
gldB
Protein involved in gliding motility GldB.
  
   
 0.771
SDI96196.1
Protein involved in gliding motility GldN.
  
   
 0.753
SDI71119.1
Protein involved in gliding motility SprE.
  
     0.736
gldM
Protein involved in gliding motility GldM.
  
   
 0.709
gldL
Protein involved in gliding motility GldL.
  
   
 0.708
SDJ47632.1
Outer membrane lipoprotein carrier protein LolA.
  
     0.701
SDJ58147.1
Protein involved in gliding motility GldJ.
  
   
 0.696
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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