STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fjo17Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development). (436 aa)    
Predicted Functional Partners:
mrcA
Penicillin-binding protein 1A.
       0.830
SDI68720.1
Protein involved in gliding motility GldH.
       0.830
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay.
 
    0.728
SDI68651.1
Acetyltransferase (GNAT) family protein.
       0.689
SDI68798.1
Hypothetical protein.
       0.645
atoD
3-oxoacid CoA-transferase subunit A.
       0.601
SDI68843.1
Peptidase family S41.
   
   0.489
SDJ05245.1
Chemotaxis protein methyltransferase CheR.
    
   0.481
atoA
3-oxoacid CoA-transferase subunit B.
       0.455
SDI49007.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
  
     0.448
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.