STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI70467.1Uncharacterized protein. (707 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.885
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.844
SDJ44951.1
RNA polymerase Rpb6.
    
 0.827
SDI70431.1
Uncharacterized membrane protein YsdA, DUF1294 family.
       0.562
SDI48194.1
Tetratricopeptide repeat-containing protein.
    
   0.412
SDI62950.1
Signal transduction histidine kinase.
    
   0.412
SDI63056.1
Tetratricopeptide repeat-containing protein.
    
   0.412
SDI71119.1
Protein involved in gliding motility SprE.
    
   0.412
SDI75741.1
Tetratricopeptide repeat-containing protein.
    
   0.412
SDI77551.1
Por secretion system C-terminal sorting domain-containing protein.
    
   0.412
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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