STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI71632.1Protein of unknown function. (258 aa)    
Predicted Functional Partners:
SDI71600.1
Tetratricopeptide repeat-containing protein.
 
    0.833
SDJ47632.1
Outer membrane lipoprotein carrier protein LolA.
  
 
 
 0.824
SDI71665.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
     0.797
SDJ05310.1
Protein of unknown function.
  
     0.697
SDI95833.1
Hypothetical protein.
  
     0.681
SDJ63344.1
Hypothetical protein.
  
     0.660
SDJ34067.1
Hypothetical protein.
  
     0.635
SDJ88419.1
Family of unknown function; Manually curated.
  
     0.633
SDI71563.1
Glucose-1-phosphate thymidylyltransferase; Manually curated.
       0.616
SDI88574.1
Hypothetical protein.
  
     0.615
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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