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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI71958.1T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. (138 aa)    
Predicted Functional Partners:
SDI72060.1
DNA (cytosine-5)-methyltransferase 1.
 
   
 0.919
SDI72091.1
DNA (cytosine-5)-methyltransferase 1.
 
   
 0.904
SDI72030.1
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB.
 
     0.859
SDJ69634.1
DNA (cytosine-5)-methyltransferase 1.
 
   
 0.793
SDI71998.1
Hypothetical protein.
       0.785
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
   
 
 0.641
SDI71924.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
       0.592
SDI72130.1
Helix-turn-helix domain-containing protein.
       0.444
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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