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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI72393.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family. (409 aa)    
Predicted Functional Partners:
SDI72432.1
Predicted dehydrogenase.
 
     0.931
SDI72360.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
     0.888
SDI72294.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.861
SDI72467.1
Acyl dehydratase.
 
     0.841
SDI72329.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
     0.783
SDJ94765.1
PAS domain S-box-containing protein.
  
 
 0.593
SDI75168.1
Signal transduction histidine kinase.
  
 
 0.509
SDI72500.1
MFS transporter, FHS family, L-fucose permease.
       0.505
SDI94336.1
AraC family transcriptional regulator; ABC-type sugar transport system, substrate-binding protein, contains N-terminal xre family HTH domain.
  
  
 0.439
SDI94629.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
  
 0.439
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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