STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufECysteine desulfuration protein SufE. (139 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.998
sufD
Iron-regulated ABC transporter permease protein SufD.
 
   0.834
sufB
Iron-regulated ABC transporter membrane component SufB.
 
   0.811
sufC
Iron-regulated ABC transporter ATPase subunit SufC.
 
   0.795
SDI74121.1
Hypothetical protein.
       0.776
SDI74013.1
FeS assembly SUF system protein.
 
     0.640
SDI74052.1
GxxExxY protein.
       0.545
SDI73974.1
Protein of unknown function.
       0.493
SDJ26627.1
tRNA A37 threonylcarbamoyladenosine dehydratase.
   
 
 0.410
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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