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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufAIron-sulfur cluster assembly protein; Belongs to the HesB/IscA family. (109 aa)    
Predicted Functional Partners:
SDJ97688.1
Cysteine desulfurase.
 
  
 0.824
sufB
Iron-regulated ABC transporter membrane component SufB.
  
 
 0.819
sufC
Iron-regulated ABC transporter ATPase subunit SufC.
  
 
 0.801
sufD
Iron-regulated ABC transporter permease protein SufD.
  
 
 0.752
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.702
SDI88832.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
 
 
 0.675
SDI56126.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.630
paaE
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.616
sufS
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.586
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.554
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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