STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI75612.1Hypothetical protein. (543 aa)    
Predicted Functional Partners:
batA
Ca-activated chloride channel family protein.
 
     0.899
SDI75741.1
Tetratricopeptide repeat-containing protein.
 
     0.886
batD
Oxygen tolerance.
 
     0.879
batE
SH3 domain-containing protein.
 
    0.853
batB
Ca-activated chloride channel family protein.
 
     0.849
SDI75569.1
Protein of unknown function DUF58.
 
    0.848
SDI82086.1
Protein of unknown function.
  
     0.740
SDI50632.1
Surface antigen.
  
     0.739
SDJ63987.1
Hypothetical protein.
  
     0.733
SDI70841.1
Hypothetical protein.
  
     0.730
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.