Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDI78255.1Two component transcriptional regulator, LytTR family. (272 aa)    
Predicted Functional Partners:
SDI66477.1
Histidine kinase.
 
  0.837
SDI88984.1
Histidine kinase.
 
  0.836
SDK08190.1
Histidine kinase.
 
  0.835
SDI62301.1
Histidine kinase.
 
  0.833
SDJ90590.1
Histidine kinase.
 
  0.820
SDI62262.1
Two component transcriptional regulator, LytTR family.
  
     0.765
SDI95224.1
Two component transcriptional regulator, LytTR family.
  
     0.695
SDI48782.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 0.657
SDI57117.1
Two component regulator propeller.
    
 0.471
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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