STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI78807.1ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). (1073 aa)    
Predicted Functional Partners:
SDI78881.1
PD-(D/E)XK nuclease superfamily protein.
 
  
 0.925
SDJ84935.1
UvrD-like helicase C-terminal domain-containing protein.
 
 
 0.798
SDI69033.1
Helicase.
  
 
 0.763
SDI78732.1
Lipoprotein-releasing system permease protein.
 
     0.714
SDJ73011.1
Protein of unknown function.
  
     0.697
dnaE
DNA polymerase III, alpha subunit.
 
  
 0.674
SDJ83774.1
Protein of unknown function.
  
     0.605
SDI55312.1
Hypothetical protein.
  
     0.596
SDK06280.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.594
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.591
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.