STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI84466.1Alpha-L-rhamnosidase N-terminal domain-containing protein. (774 aa)    
Predicted Functional Partners:
SDI58124.1
Trehalose utilisation.
 
      0.636
SDJ33414.1
L-rhamnose-H+ transport protein.
  
     0.545
SDJ28034.1
Unsaturated chondroitin disaccharide hydrolase.
  
  
  0.509
SDJ26985.1
Rhamnogalacturonyl hydrolase YesR.
  
  
  0.441
SDJ42379.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
  
  
  0.439
SDI62049.1
Starch synthase.
   
    0.434
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.434
rpmA
LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.
       0.427
SDJ64163.1
Oxidoreductase family, NAD-binding Rossmann fold.
  
  
  0.418
SDJ27415.1
Protein of unknown function.
  
  
  0.406
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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