STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI86447.1Proline racemase; Belongs to the proline racemase family. (336 aa)    
Predicted Functional Partners:
SDI86410.1
NADP-dependent aldehyde dehydrogenase.
 
 
  0.953
SDI86367.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.938
dadA
D-amino-acid dehydrogenase.
 
  
 0.936
SDI86808.1
Ornithine cyclodeaminase.
 
  
 0.815
SDI86327.1
Transcriptional regulator, AraC family.
 
     0.746
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.713
SDJ95810.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
  0.693
SDI52498.1
TspO and MBR related proteins.
   
    0.575
nuoG
NADH dehydrogenase subunit G.
    
  0.475
dpp4
Dipeptidyl-peptidase-4.
       0.446
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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