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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yozBPutative membrane protein. (180 aa)    
Predicted Functional Partners:
ypmQ
Protein SCO1/2.
    0.954
SDI88668.1
Hypothetical protein.
 
     0.860
SDI88574.1
Hypothetical protein.
       0.814
SDI88498.1
Cytochrome c oxidase subunit 3.
 
     0.766
SDI88541.1
Cytochrome C oxidase subunit IV.
 
     0.742
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
    0.739
SDI63668.1
Protein SCO1/2.
 
    0.728
ctaE
Cytochrome c oxidase subunit 3.
 
     0.557
ctaC
Cytochrome c oxidase subunit 2.
 
    0.522
SDI96262.1
Protein of unknown function.
 
     0.513
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.