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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI94810.1Starch-binding associating with outer membrane. (566 aa)    
Predicted Functional Partners:
SDI94774.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.962
SDI94845.1
Protein of unknown function.
 
     0.906
SDI94532.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.835
SDJ28942.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.801
SDI94629.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
 
   0.769
SDI94923.1
Sucrose-6-phosphate hydrolase SacC, GH32 family; Belongs to the glycosyl hydrolase 32 family.
 
     0.743
xylE-2
MFS transporter, sugar porter (SP) family; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
     0.720
SDI94662.1
Por secretion system C-terminal sorting domain-containing protein.
 
     0.719
SDI94336.1
AraC family transcriptional regulator; ABC-type sugar transport system, substrate-binding protein, contains N-terminal xre family HTH domain.
  
 
   0.714
SDJ29042.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 
   0.706
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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