Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (220 aa)    
Predicted Functional Partners:
SDJ72176.1
Transketolase.
  
 0.981
tktA
Transketolase.
  
 0.980
SDJ65288.1
Transketolase; Belongs to the transketolase family.
 
 0.959
tktC
Transketolase.
 
 
 0.948
rpiB
Ribose 5-phosphate isomerase B.
 
 
 0.915
SDJ32847.1
Xylulokinase.
    
 0.901
SDJ72125.1
Transketolase.
 
 
 0.886
araB
L-ribulokinase; Belongs to the ribulokinase family.
 
   
  0.879
araD
L-ribulose 5-phosphate 4-epimerase.
   
 
 0.877
SDI97450.1
2-dehydro-3-deoxygluconokinase.
  
 0.867
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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