STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI99210.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (325 aa)    
Predicted Functional Partners:
SDI71154.1
Protein CcmA, bactofilin family.
 
   
 0.638
SDI99172.1
DNA-binding transcriptional regulator, MerR family.
       0.616
mrcA
Penicillin-binding protein 1A.
  
     0.528
SDI70538.1
Hypothetical protein.
  
     0.504
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.474
SDI99131.1
LemA protein.
       0.466
SDK06280.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
 
 0.459
SDJ02567.1
LysM domain-containing protein.
  
 
 0.427
SDI75866.1
Membrane protein required for colicin V production.
 
     0.409
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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