STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ01396.1Protein of unknown function. (424 aa)    
Predicted Functional Partners:
SDJ01329.1
Putative porin.
       0.578
dnaQ
DNA polymerase-3 subunit epsilon.
       0.578
SDJ01661.1
DNA uptake protein ComE.
 
     0.535
SDJ44951.1
RNA polymerase Rpb6.
  
     0.505
SDI83289.1
Protein of unknown function.
  
     0.478
smf
DNA processing protein.
 
     0.437
SDJ34257.1
OstA-like protein.
  
     0.425
sprA
Protein involved in gliding motility SprA.
  
     0.406
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.