STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ07251.1Outer membrane protein beta-barrel domain-containing protein. (184 aa)    
Predicted Functional Partners:
SDI92222.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.575
SDJ27221.1
Starch-binding associating with outer membrane.
  
     0.536
SDJ27181.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.529
SDJ57991.1
SusD family protein.
  
    0.523
SDJ12794.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.515
SDK07733.1
Membrane protein YfhO.
  
     0.505
SDJ58028.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.471
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.462
SDI89257.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
   0.456
SDI87727.1
Iron complex outermembrane recepter protein; Manually curated.
  
     0.446
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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