STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ09968.1Protein of unknown function. (273 aa)    
Predicted Functional Partners:
SDJ10005.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.939
SDJ10126.1
Transcriptional regulator, TetR family.
 
     0.633
SDI71600.1
Tetratricopeptide repeat-containing protein.
  
     0.611
SDJ10083.1
Hypothetical protein.
 
     0.609
porP
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.598
SDJ10045.1
Predicted arabinose efflux permease, MFS family.
 
     0.581
SDK07125.1
CarboxypepD_reg-like domain-containing protein.
  
     0.568
SDI68720.1
Protein involved in gliding motility GldH.
  
     0.566
SDK06585.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
  
     0.558
SDI87037.1
Hypothetical protein.
  
     0.538
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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