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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ11228.1PAS domain-containing protein. (603 aa)    
Predicted Functional Partners:
SDJ11195.1
Two component transcriptional regulator, LuxR family.
 
  0.949
nreC
Two component transcriptional regulator, LuxR family.
 
  0.887
SDJ11262.1
Protein of unknown function.
 
 
   0.885
SDK01610.1
Two component transcriptional regulator, LuxR family.
 
  0.871
SDI93507.1
Two component transcriptional regulator, LuxR family.
 
  0.863
nirD-2
Nitrite reductase (NADH) small subunit.
 
     0.855
SDI75128.1
Two component transcriptional regulator, LuxR family.
 
  0.844
SDJ95849.1
Rubredoxin.
  
     0.758
SDI78382.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
  0.755
SDJ11966.1
PAS domain S-box-containing protein.
  
 0.725
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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