STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ12037.1ABC-2 type transport system permease protein. (368 aa)    
Predicted Functional Partners:
SDJ12064.1
ABC-2 type transport system ATP-binding protein.
 
 0.997
SDJ12097.1
ABC-type multidrug transport system, ATPase component.
 
 0.997
gldA
Protein involved in gliding motility GldA.
 
 
 0.949
SDJ12131.1
HlyD family secretion protein.
 
  
 0.919
SDJ12157.1
Outer membrane protein TolC.
 
     0.913
lptB
Lipopolysaccharide export system ATP-binding protein.
   
  0.900
SDJ12186.1
Transcriptional regulator, TetR family.
 
     0.889
natA
ABC-2 type transport system ATP-binding protein.
 
      0.854
SDJ12002.1
ABC-2 type transport system permease protein.
 
  
 
0.824
SDJ53447.1
Lipopolysaccharide transport system permease protein.
    
  0.567
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.