STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ27181.1TonB-linked outer membrane protein, SusC/RagA family. (1046 aa)    
Predicted Functional Partners:
SDJ27221.1
Starch-binding associating with outer membrane.
 
     0.935
SDJ57991.1
SusD family protein.
  
     0.762
SDJ29296.1
Starch-binding associating with outer membrane.
  
     0.758
SDI57486.1
Starch-binding associating with outer membrane.
  
     0.751
SDJ33778.1
Starch-binding associating with outer membrane.
  
     0.746
SDI92258.1
SusD family protein.
  
     0.676
SDI98446.1
Starch-binding associating with outer membrane.
  
     0.658
SDI97982.1
Starch-binding associating with outer membrane.
  
     0.598
SDJ07251.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.529
SDJ27340.1
Heparinase II/III-like protein.
 
     0.524
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.