STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ28542.1Alginate lyase. (427 aa)    
Predicted Functional Partners:
SDJ28510.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.877
SDJ28574.1
IPT/TIG domain-containing protein.
 
     0.807
SDJ28619.1
Starch-binding associating with outer membrane.
 
  
  0.774
SDJ28309.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
  
     0.761
SDJ28665.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.687
SDJ28353.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.650
SDI51719.1
Carbohydrate binding domain-containing protein.
  
     0.526
SDJ42379.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
  
     0.515
SDJ11903.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
     0.448
SDI94418.1
Alpha-galactosidase.
  
     0.446
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.