STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ28574.1IPT/TIG domain-containing protein. (390 aa)    
Predicted Functional Partners:
SDJ28619.1
Starch-binding associating with outer membrane.
 
  
  0.900
ctaC
Cytochrome c oxidase subunit 2.
   
 0.864
SDJ28665.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.864
SDJ28542.1
Alginate lyase.
 
     0.807
SDJ28510.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
     0.785
ccoN
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.773
SDJ28309.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
  
     0.632
SDJ28437.1
Alginate lyase.
  
  
  0.623
SDJ00563.1
Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.
   
 0.622
cycA
Nitrite reductase (NO-forming).
   
 0.622
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.