STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ29793.1AraC-type DNA-binding protein. (288 aa)    
Predicted Functional Partners:
SDJ29839.1
Predicted oxidoreductase.
 
     0.618
SDI72229.1
AraC-type DNA-binding protein.
  
   0.563
SDJ29874.1
Protein of unknown function.
       0.561
SDI92431.1
AraC-type DNA-binding protein.
  
   0.558
SDJ29911.1
Protein of unknown function.
  
   0.551
SDJ42099.1
Transcriptional regulator, AraC family.
  
     0.498
SDJ29751.1
Modulator of drug activity B.
       0.488
SDJ29946.1
Predicted oxidoreductase.
 
     0.485
SDI59556.1
Transcriptional regulator, AraC family.
  
     0.477
SDJ29715.1
4-carboxymuconolactone decarboxylase.
 
     0.440
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.