STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ29911.1Protein of unknown function. (159 aa)    
Predicted Functional Partners:
SDJ29839.1
Predicted oxidoreductase.
 
     0.740
SDJ30020.1
Transcriptional regulator, AraC family.
 
   0.721
SDJ29946.1
Predicted oxidoreductase.
 
     0.709
SDJ29874.1
Protein of unknown function.
       0.675
SDJ29793.1
AraC-type DNA-binding protein.
  
   0.551
SDJ29981.1
Aldo/keto reductase.
       0.523
SDJ35316.1
Methane oxygenase PmoA.
  
     0.489
SDJ29715.1
4-carboxymuconolactone decarboxylase.
   
  0.473
SDJ31560.1
4-carboxymuconolactone decarboxylase.
    
 0.452
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.