STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB2Xylan 1,4-beta-xylosidase. (562 aa)    
Predicted Functional Partners:
SDJ30182.1
Iron complex outermembrane recepter protein.
       0.741
SDI66154.1
alpha-L-fucosidase.
  
     0.480
SDJ30266.1
Cystathionine beta-synthase.
       0.468
SDI96643.1
Inositol oxygenase.
  
     0.455
SDJ52188.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
    0.446
SDJ42212.1
Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.433
SDJ33735.1
O-Glycosyl hydrolase family 30.
  
     0.427
SDJ29981.1
Aldo/keto reductase.
    
  0.423
SDJ10083.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.