STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ31478.13-oxoacid CoA-transferase. (448 aa)    
Predicted Functional Partners:
SDK02207.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.984
atoD
3-oxoacid CoA-transferase subunit A.
 
0.967
atoA
3-oxoacid CoA-transferase subunit B.
 
0.965
SDJ31560.1
4-carboxymuconolactone decarboxylase.
 
 
 0.948
paaJ
3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.889
SDI55670.1
D-citramalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.837
mvaB
hydroxymethylglutaryl-CoA lyase.
  
 
 0.837
leuA
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.837
accC
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 
 0.823
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit.
 
 
 0.822
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.