STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobAP-hydroxybenzoate 3-monooxygenase. (392 aa)    
Predicted Functional Partners:
SDJ31560.1
4-carboxymuconolactone decarboxylase.
 
 
 0.962
SDJ31599.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.934
SDJ31644.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
  
 0.916
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 0.903
SDJ31733.1
Transcriptional regulator, AraC family.
 
     0.775
SDJ32577.1
Catechol 2,3-dioxygenase.
 
  
 0.770
paaE
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
  
 0.741
SDJ32671.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
     0.700
SDJ31478.1
3-oxoacid CoA-transferase.
 
   
 0.682
mvaS
hydroxymethylglutaryl-CoA synthase.
   
  
 0.594
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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