STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ33639.1Alpha galactosidase A. (455 aa)    
Predicted Functional Partners:
SDJ33595.1
Glycosyl hydrolases family 43.
      0.827
SDJ33699.1
Protein of unknown function; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.770
SDJ33548.1
Polygalacturonase.
 
     0.652
SDJ42212.1
Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.618
SDI94418.1
Alpha-galactosidase.
  
  
  0.613
SDI60316.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.568
SDI57079.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.562
SDJ64698.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
  
  
  0.559
lacZ
Beta-galactosidase.
  
  
  0.530
SDJ33501.1
Oligogalacturonide lyase.
       0.530
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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