STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ33735.1O-Glycosyl hydrolase family 30. (546 aa)    
Predicted Functional Partners:
SDJ33778.1
Starch-binding associating with outer membrane.
 
     0.808
SDJ33816.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.757
SDJ33849.1
Hypothetical protein.
       0.675
SDI60690.1
Protein of unknown function.
  
     0.575
SDI60727.1
Protein of unknown function.
  
     0.548
SDJ33595.1
Glycosyl hydrolases family 43.
 
 
  0.545
SDI89694.1
Glycosyl hydrolases family 32 N-terminal domain-containing protein.
  
 
  0.537
SDI54186.1
Rhamnogalacturonyl hydrolase YesR.
  
 
  0.520
SDI60919.1
Protein of unknown function.
  
     0.502
SDI54259.1
alpha-L-rhamnosidase.
  
     0.496
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.