Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SDJ33816.1TonB-linked outer membrane protein, SusC/RagA family. (1003 aa)    
Predicted Functional Partners:
SDJ33778.1
Starch-binding associating with outer membrane.
 
     0.942
SDJ57991.1
SusD family protein.
  
     0.768
SDJ33735.1
O-Glycosyl hydrolase family 30.
       0.757
SDJ27221.1
Starch-binding associating with outer membrane.
  
     0.707
SDI98446.1
Starch-binding associating with outer membrane.
  
     0.660
SDJ33849.1
Hypothetical protein.
       0.645
SDI79928.1
Starch-binding associating with outer membrane.
 
   
 0.629
SDI73264.1
Starch-binding associating with outer membrane.
  
     0.586
SDI72725.1
RagB/SusD domain-containing protein.
  
     0.577
SDI87765.1
Starch-binding associating with outer membrane.
  
     0.571
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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