STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ39709.1Signal transduction histidine kinase. (452 aa)    
Predicted Functional Partners:
SDJ39665.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.968
SDJ11966.1
PAS domain S-box-containing protein.
 
0.852
SDJ39750.1
Outer membrane protein, cobalt-zinc-cadmium efflux system.
 
     0.840
SDI91879.1
Two component transcriptional regulator, winged helix family.
 
  0.839
SDI48782.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 0.835
SDJ39789.1
Membrane fusion protein, cobalt-zinc-cadmium efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.794
SDJ05277.1
Signal transduction histidine kinase.
 
0.764
SDI75168.1
Signal transduction histidine kinase.
 
 
 0.742
SDJ94724.1
Response regulator receiver domain-containing protein.
 
 0.736
SDJ62756.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 
  0.703
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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