STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
porPType IX secretion system membrane protein, PorP/SprF family. (311 aa)    
Predicted Functional Partners:
SDJ40003.1
WD40-like Beta Propeller Repeat.
 
     0.937
SDJ40089.1
Gliding motility-associated C-terminal domain-containing protein.
 
     0.909
SDI88870.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.714
SDJ01193.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.702
SDJ92579.1
WD40-like Beta Propeller Repeat.
  
     0.662
SDI71119.1
Protein involved in gliding motility SprE.
  
   
 0.656
SDI89418.1
Hypothetical protein.
  
     0.630
SDJ47740.1
Outer membrane protein OmpA.
  
     0.628
SDI92704.1
Protein of unknown function.
  
     0.624
SDJ75092.1
Methyltransferase domain-containing protein.
 
     0.618
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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