STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuA-2Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (402 aa)    
Predicted Functional Partners:
uxaC
D-glucuronate isomerase.
 
  
 0.941
SDJ42058.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
  0.932
SDI97450.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.822
SDI56803.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.778
SDI96534.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.722
SDI97513.1
Tagaturonate reductase.
 
 
 0.718
uxaA
Altronate hydrolase.
 
 
 0.709
rpiB
Ribose 5-phosphate isomerase B.
   
 
  0.595
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
  
 
0.571
SDJ42099.1
Transcriptional regulator, AraC family.
       0.532
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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