STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ42970.1alpha-L-fucosidase. (696 aa)    
Predicted Functional Partners:
SDJ90910.1
alpha-L-fucosidase.
 
  
 
0.734
SDI66042.1
alpha-L-fucosidase 2.
 
 
  0.640
SDI57263.1
alpha-L-fucosidase 2.
 
 
  0.608
SDI64459.1
alpha-L-fucosidase 2.
 
 
  0.597
SDJ64925.1
alpha-L-fucosidase 2.
 
 
  0.590
SDI66154.1
alpha-L-fucosidase.
  
  
  0.575
SDI66119.1
alpha-L-fucosidase.
  
  
 
0.551
SDJ42670.1
Predicted neuraminidase (sialidase).
 
  
  0.527
SDJ42925.1
Glucosamine-6-phosphate deaminase.
       0.484
SDJ43013.1
Hypothetical protein.
       0.482
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.