Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDI59762.1 | recA | SAMN05192550_0307 | SAMN05192550_0467 | DNA polymerase V; Belongs to the peptidase S24 family. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.969 |
SDI59762.1 | recN | SAMN05192550_0307 | SAMN05192550_2125 | DNA polymerase V; Belongs to the peptidase S24 family. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.718 |
SDJ44875.1 | SDJ44951.1 | SAMN05192550_2126 | SAMN05192550_2128 | Protein of unknown function. | RNA polymerase Rpb6. | 0.922 |
SDJ44875.1 | bamD | SAMN05192550_2126 | SAMN05192550_2129 | Protein of unknown function. | Beta-barrel assembly machine subunit BamD. | 0.917 |
SDJ44875.1 | coaBC | SAMN05192550_2126 | SAMN05192550_2127 | Protein of unknown function. | Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.830 |
SDJ44875.1 | fabV | SAMN05192550_2126 | SAMN05192550_2124 | Protein of unknown function. | Enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+); Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. | 0.437 |
SDJ44875.1 | recN | SAMN05192550_2126 | SAMN05192550_2125 | Protein of unknown function. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.790 |
SDJ44951.1 | SDJ44875.1 | SAMN05192550_2128 | SAMN05192550_2126 | RNA polymerase Rpb6. | Protein of unknown function. | 0.922 |
SDJ44951.1 | bamD | SAMN05192550_2128 | SAMN05192550_2129 | RNA polymerase Rpb6. | Beta-barrel assembly machine subunit BamD. | 0.952 |
SDJ44951.1 | coaBC | SAMN05192550_2128 | SAMN05192550_2127 | RNA polymerase Rpb6. | Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.866 |
SDJ44951.1 | fabV | SAMN05192550_2128 | SAMN05192550_2124 | RNA polymerase Rpb6. | Enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+); Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. | 0.437 |
SDJ44951.1 | mfd | SAMN05192550_2128 | SAMN05192550_0708 | RNA polymerase Rpb6. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.842 |
SDJ44951.1 | recN | SAMN05192550_2128 | SAMN05192550_2125 | RNA polymerase Rpb6. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.726 |
bamD | SDJ44875.1 | SAMN05192550_2129 | SAMN05192550_2126 | Beta-barrel assembly machine subunit BamD. | Protein of unknown function. | 0.917 |
bamD | SDJ44951.1 | SAMN05192550_2129 | SAMN05192550_2128 | Beta-barrel assembly machine subunit BamD. | RNA polymerase Rpb6. | 0.952 |
bamD | coaBC | SAMN05192550_2129 | SAMN05192550_2127 | Beta-barrel assembly machine subunit BamD. | Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.830 |
bamD | fabV | SAMN05192550_2129 | SAMN05192550_2124 | Beta-barrel assembly machine subunit BamD. | Enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+); Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family. | 0.437 |
bamD | recN | SAMN05192550_2129 | SAMN05192550_2125 | Beta-barrel assembly machine subunit BamD. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.758 |
coaBC | SDJ44875.1 | SAMN05192550_2127 | SAMN05192550_2126 | Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | Protein of unknown function. | 0.830 |
coaBC | SDJ44951.1 | SAMN05192550_2127 | SAMN05192550_2128 | Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | RNA polymerase Rpb6. | 0.866 |
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