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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ45254.1Two component transcriptional regulator, LytTR family. (231 aa)    
Predicted Functional Partners:
SDI66477.1
Histidine kinase.
 
  0.860
SDI88984.1
Histidine kinase.
 
  0.860
SDI62301.1
Histidine kinase.
  
  0.859
SDK08190.1
Histidine kinase.
  
  0.859
SDJ90590.1
Histidine kinase.
 
  0.854
SDI95224.1
Two component transcriptional regulator, LytTR family.
  
  
  0.807
SDI78255.1
Two component transcriptional regulator, LytTR family.
  
  
 
0.604
SDI57117.1
Two component regulator propeller.
    
 0.579
SDJ27378.1
Signal transduction histidine kinase.
  
  
  0.544
SDJ42298.1
Signal transduction histidine kinase.
  
  
  0.538
Your Current Organism:
Flavobacterium glycines
NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.